Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs75476035 | chr5:111622184 | A/G | 2.6E-6 | 171 | 15.72 | 15.67 | 1.85 | KM Plot |
| PAAD | rs7548971 | chr1:114853862 | T/G | 0 | 170 | 0.4 | 15.13 | 15.57 | KM Plot |
| PAAD | rs75494098 | chr7:20663096 | C/T | 1.81E-6 | 178 | 15.53 | 15.57 | 3.67 | KM Plot |
| PAAD | rs75495305 | chr7:20666588 | T/G | 1.79E-6 | 177 | 15.53 | 15.67 | 3.67 | KM Plot |
| PAAD | rs75504333 | chr6:169827440 | G/C | 1.66E-6 | 176 | 15.57 | 13.87 | 3.43 | KM Plot |
| PAAD | rs75507353 | chr2:128470947 | A/G | 9.11E-10 | 177 | 15.67 | 12.6 | 2.2 | KM Plot |
| PAAD | rs75511623 | chr2:217939923 | C/T | 2.32E-5 | 174 | 15.5 | 16.17 | 5.97 | KM Plot |
| PAAD | rs75523178 | chr11:125560066 | G/T | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs75553583 | chr2:70535437 | G/A | 0 | 175 | 15.4 | 17.4 | 1.03 | KM Plot |
| PAAD | rs7557377 | chr2:102736588 | C/T | 4.44E-5 | 177 | 15.77 | 14.6 | 7.3 | KM Plot |
| PAAD | rs75603094 | chr18:24174263 | A/G | 2.94E-6 | 172 | 15.37 | 17.5 | 3.43 | KM Plot |
| PAAD | rs75606178 | chr1:227421821 | A/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs75623316 | chr8:72563402 | C/A | 7.36E-8 | 175 | 15.82 | 12.63 | 3.17 | KM Plot |
| PAAD | rs75632692 | chr11:34773578 | T/A | 3.06E-6 | 177 | 15.67 | 11.13 | 3.67 | KM Plot |
| PAAD | rs75647752 | chr17:12890023 | T/A | 5.68E-6 | 173 | 16.08 | 15.47 | 7.77 | KM Plot |